Structural Similarity to Link Sequence Space

Supplementary material for:

Structural Similarity to Link Sequence Space.

New Potential Superfamilies and Implications for Structural Genomics

Patrick Aloy¹, Baldomero Oliva², Enrique Querol², Francesc X Aviles² and Robert B Russell^1*

^{1- EMBL}
^{Meyerhofstrasse,1. D-69117, Heidelberg. Germany}

^{2- Insttut de Biologia Fonamental}
^{Universitat Autonoma de Barcelona. Bellaterra 08193,
Barcelona. Spain}

^{* Corresponding author}

Published Tables and Figures

Table I - Potential pairings for SMART domains at fold and superfamily level

Table II - Potential pairings for Pfam families at fold and superfamily level

Figure I -

Figure II -

Figure III -

Figure IV -

Figure V -

Supplementary Information

Table i - Significant links between SMART domains at superfamily level

Table ii - Significant links between SMART domains at fold level

Table iii - Significant links between Pfam families at superfamily level

Table iv - Significant links between Pfam families at fold level

General table legend

The first column shows the SCOP superfamily/fold, the second and the fifth the SMART/Pfam linked domains. The third and sixth show the number of sequences and the fourth and seventh columns the diversity score for SMART/Pfam domains i and j respectively. The eighth and ninth columns show the P_3D-value and the MP_3D-value. Finally columns ten and eleven show the protein sequences used to link the families.