SCOP Superfamily |
SMART i |
Ni Seqs |
Di |
SMART j |
Nj Seqs |
Dj |
P3D |
MP3D |
Identities |
N eq residues |
Link i |
Link j |
|
Periplasmic binding protein-like II |
PBPb |
67 |
20.1 |
PBPe |
37 |
8.922 |
2.84E-29 |
5.09E-27 |
71 |
160 |
1lst.3.84.1.1.3 |
O50181/1-230 |
|
PH domain-like |
PH |
314 |
41.64 |
BTK |
9 |
3.957 |
1.81E-28 |
2.98E-26 |
37 |
47 |
1btka.2.49.1.1.5 |
JN0471 |
|
P-loop containing nucleotide triphosphate hydrolases |
ARF |
3 |
1.517 |
RAB |
48 |
5.234 |
1.30E-24 |
1.03E-23 |
49 |
94 |
3raba.3.30.1.6.5 |
RB12_CANFA-171|signalling|RAB |
|
P-loop containing nucleotide triphosphate hydrolases |
RAB |
48 |
5.234 |
RAS |
35 |
3.813 |
1.25E-23 |
2.49E-22 |
48 |
94 |
3raba.3.30.1.6.5 |
RB12_CANFA-171|signalling|RAB |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
RAB |
48 |
5.234 |
1.25E-23 |
2.79E-22 |
48 |
94 |
3raba.3.30.1.6.5 |
RB12_CANFA-171|signalling|RAB |
|
Histone-fold |
H2B |
7 |
2.271 |
AHL |
37 |
7.078 |
3.50E-16 |
5.63E-15 |
32 |
63 |
1aoid.1.23.1.1.4 |
H2B_ENTIV/1-10 |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
ARF |
3 |
1.517 |
2.18E-13 |
1.41E-12 |
37 |
98 |
3raba.3.30.1.6.5 |
CEF22E12_2-175|signalling|RHO |
|
P-loop containing nucleotide triphosphate hydrolases |
ARF |
3 |
1.517 |
SAR |
3 |
1.607 |
7.39E-13 |
1.80E-12 |
41 |
121 |
sar1_arath|signalling|SAR |
arf2_yeast|signalling|ARF |
|
P-loop containing nucleotide triphosphate hydrolases |
ARF |
3 |
1.517 |
RAS |
35 |
3.813 |
5.76E-13 |
3.33E-12 |
36 |
96 |
3raba.3.30.1.6.5 |
RAS2_NEUCR-191|signalling|RAS |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
RAS |
35 |
3.813 |
4.87E-13 |
7.93E-12 |
38 |
105 |
3raba.3.30.1.6.5 |
CEC25D7_8-198|signalling|RAS |
|
Histone-fold |
H4 |
8 |
2.066 |
AHL |
37 |
7.078 |
4.66E-12 |
6.81E-11 |
17 |
25 |
1aoib.1.23.1.1.8 |
O61186/1-65 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
ARF |
3 |
1.517 |
2.53E-10 |
4.90E-10 |
33 |
100 |
3raba.3.30.1.6.5 |
1kao.3.30.1.6.4 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
RAB |
48 |
5.234 |
3.02E-09 |
2.02E-08 |
29 |
88 |
P41917|signalling|RAN |
RNRABGTPB_1-180|signalling|RAB |
|
Nucleic acid-binding proteins |
S1 |
234 |
21.43 |
CSP |
52 |
10.34 |
1.08E-10 |
2.39E-08 |
18 |
32 |
O67834/1-57 |
O67834_1/1-65 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
RAS |
35 |
3.813 |
5.74E-07 |
2.79E-06 |
27 |
98 |
P41917|signalling|RAN |
MMAF9246_1-202|signalling|RAS |
|
P-loop containing nucleotide triphosphate hydrolases |
G-alpha |
44 |
7.12 |
RAS |
35 |
3.813 |
1.28E-07 |
3.48E-06 |
28 |
97 |
RSR1_CANAL-168|signalling|RAS |
gi|2494886|sp|Q|signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
HATPase_c |
439 |
18.49 |
TOP2c |
48 |
6.776 |
3.15E-08 |
3.95E-06 |
17 |
38 |
GYRB_MYCHO/1-14 |
GYRB_MYCHO/1-6 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
RHO |
36 |
4.271 |
1.94E-06 |
1.06E-05 |
26 |
98 |
P41917|signalling|RAN |
SPAC16A10_4-193|signalling|RHO |
|
P-loop containing nucleotide triphosphate hydrolases |
G-alpha |
44 |
7.12 |
SAR |
3 |
1.607 |
1.08E-06 |
1.24E-05 |
30 |
119 |
1hura.3.30.1.6.9 |
gi|120986|sp|P2|signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
ARF |
3 |
1.517 |
G-alpha |
44 |
7.12 |
3.84E-06 |
4.15E-05 |
29 |
120 |
arf2_yeast|signalling|ARF |
gi|120986|sp|P2|signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
G-alpha |
44 |
7.12 |
2.88E-06 |
8.76E-05 |
26 |
100 |
1kao.3.30.1.6.4 |
gi|171615/1-449|signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
G-alpha |
44 |
7.12 |
1.07E-05 |
9.72E-05 |
25 |
101 |
1ftn.3.30.1.6.8 |
gi|3924778|gnl||signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
RAB |
48 |
5.234 |
GuKc |
31 |
11.74 |
1.90E-06 |
0.00011675 |
20 |
64 |
RABC_DICDI-172|signalling|RAB |
P91425/1-188|signalling|GuKc |
|
P-loop containing nucleotide triphosphate hydrolases |
G-alpha |
44 |
7.12 |
RAB |
48 |
5.234 |
6.25E-06 |
0.00023291 |
24 |
92 |
HSU237H1_1-177|signalling|RAB |
gi|3319382/1-42|signalling|G-alpha |
|
P-loop containing nucleotide triphosphate hydrolases |
RAB |
48 |
5.234 |
SAR |
3 |
1.607 |
4.12E-05 |
0.00034653 |
22 |
90 |
PFRAB11GN_1-180|signalling|RAB |
sar1_arath|signalling|SAR |
|
Homeodomain-like |
SANT |
177 |
20.02 |
HOX |
263 |
13.26 |
1.32E-06 |
0.00035041 |
12 |
25 |
G4079592_2/1-50|nuclear|SANT |
Q06615/1-63|nuclear|HOX |
|
Histone-fold |
H3 |
9 |
2.645 |
AHL |
37 |
7.078 |
4.17E-05 |
0.00078068 |
17 |
60 |
1aoib.1.23.1.1.8 |
CENA_HUMAN/1-1 |
|
P-loop containing nucleotide triphosphate hydrolases |
KISc |
55 |
7.962 |
MYSc |
60 |
7.1 |
1.45E-05 |
0.00081969 |
26 |
109 |
SCH8082_6/1-724|signalling|MYSc |
KLP1_CHLRE|signalling|KISc |
|
P-loop containing nucleotide triphosphate hydrolases |
ARF |
3 |
1.517 |
MYSc |
60 |
7.1 |
7.70E-05 |
0.00082934 |
16 |
57 |
3687504/1-692|signalling|MYSc |
arf2_yeast|signalling|ARF |
|
Cystine-knot cytokines |
GHA |
9 |
1.895 |
PDGF |
10 |
4.567 |
1.55E-04 |
0.00134144 |
13 |
43 |
GLHA_RANCA/1-8 |
PDGB_FELCA/1-8 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
SAR |
3 |
1.607 |
1.04E-03 |
0.00213255 |
20 |
99 |
3raba.3.30.1.6.5 |
sar1_arath|signalling|SAR |
|
Immunoglobulin |
IGc2 |
64 |
13.46 |
IGv |
69 |
14.2 |
1.50E-05 |
0.00286698 |
14 |
40 |
CEPU_CHICK-208 |
PLK_BOVIN-141 |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
SAR |
3 |
1.607 |
4.35E-04 |
0.00298562 |
21 |
99 |
sar1_arath|signalling|SAR |
YNS0_YEAST-220|signalling|RHO |
|
P-loop containing nucleotide triphosphate hydrolases |
SAR |
3 |
1.607 |
RAS |
35 |
3.813 |
4.96E-04 |
0.00303924 |
21 |
100 |
3raba.3.30.1.6.5 |
sar1_arath|signalling|SAR |
|
Histone-fold |
H2A |
23 |
3.439 |
AHL |
37 |
7.078 |
1.45E-04 |
0.00352948 |
16 |
60 |
H2AV_TETTH/1-1 |
B64299/1-72 |
|
ConA-like lectins/glucanases |
LamG |
129 |
22.15 |
PTX |
39 |
5.093 |
3.95E-05 |
0.00445599 |
27 |
122 |
1sll.2.26.1.8.1 |
PXN1_XENLA |
|
TNF-like |
TNF |
17 |
10.14 |
C1Q |
15 |
6.119 |
1.49E-04 |
0.00924495 |
20 |
85 |
1aly.2.20.1.1.1 |
C1QB_HUMAN/1-1 |
|
Cystine-knot cytokines |
PDGF |
10 |
4.567 |
TGFB |
34 |
6.548 |
3.23E-04 |
0.00965922 |
14 |
52 |
VEGH_ORFN2/1-8 |
1tgj.7.17.1.2.1 |
|
P-loop containing nucleotide triphosphate hydrolases |
MYSc |
60 |
7.1 |
RAB |
48 |
5.234 |
2.62E-04 |
0.00973629 |
14 |
51 |
AF053130_1/1-68|signalling|MYSc |
rab7_pea|signalling|RAB |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
KISc |
55 |
7.962 |
1.34E-03 |
0.01361375 |
11 |
41 |
P41917|signalling|RAN |
KIF2_MOUSE|signalling|KISc |
|
Histone-fold |
H3 |
9 |
2.645 |
H2B |
7 |
2.271 |
2.83E-03 |
0.01699923 |
14 |
65 |
1aoid.1.23.1.1.4 |
CSE4_YEAST/1-1 |
|
P-loop containing nucleotide triphosphate hydrolases |
MYSc |
60 |
7.1 |
SAR |
3 |
1.607 |
1.67E-03 |
0.0190542 |
15 |
68 |
1hura.3.30.1.6.9 |
3687504/1-692|signalling|MYSc |
|
P-loop containing nucleotide triphosphate hydrolases |
MYSc |
60 |
7.1 |
RAS |
35 |
3.813 |
7.20E-04 |
0.01949206 |
13 |
50 |
M/2-0|signalling|MYSc |
MMAF9246_1-202|signalling|RAS |
|
Histone-fold |
H3 |
9 |
2.645 |
H4 |
8 |
2.066 |
3.65E-03 |
0.01994568 |
13 |
60 |
1aoib.1.23.1.1.8 |
CENA_HUMAN/1-1 |
|
P-loop containing nucleotide triphosphate hydrolases |
RAN |
3 |
1.276 |
MYSc |
60 |
7.1 |
2.22E-03 |
0.02011231 |
12 |
50 |
3raba.3.30.1.6.5 |
18509/1-712|signalling|MYSc |
|
PH domain-like |
WH1 |
12 |
7.387 |
RanBD |
9 |
5.061 |
5.41E-04 |
0.02022561 |
19 |
87 |
1rrpb.2.49.1.3.1 |
O88800/1-107 |
|
P-loop containing nucleotide triphosphate hydrolases |
SAR |
3 |
1.607 |
GuKc |
31 |
11.74 |
1.13E-03 |
0.02131878 |
16 |
72 |
1hura.3.30.1.6.9 |
P93757/1-187|signalling|GuKc |
|
Winged helix DNA-binding domain |
HTH_ARSR |
118 |
15.27 |
ETS |
29 |
4.478 |
3.33E-04 |
0.02277023 |
11 |
35 |
/:SPTREMBL|O58663|O58663|nuclear|HTH_ARSR |
G1621111/1-99|nuclear|ETS |
|
P-loop containing nucleotide triphosphate hydrolases |
KISc |
55 |
7.962 |
RAS |
35 |
3.813 |
8.89E-04 |
0.02698925 |
12 |
45 |
RSR1_CANAL-168|signalling|RAS |
CEF56E3_1|signalling|KISc |
|
Homeodomain-like |
PAX |
18 |
2.807 |
SANT |
177 |
20.02 |
4.85E-04 |
0.02725513 |
10 |
31 |
G3941428/1-49|nuclear|SANT |
72|Q21972/1-12|nuclear|PAX |
|
P-loop containing nucleotide triphosphate hydrolases |
POU |
10 |
2.373 |
HTH_LACI |
49 |
5.987 |
2.49E-03 |
0.03537581 |
9 |
32 |
BR3A_HUMAN/264-341 |
MALI_ECOLI |
|
DEATH domain |
DED |
18 |
9.773 |
DEATH |
44 |
16.96 |
2.27E-04 |
0.03762527 |
12 |
39 |
MC159L_MCV1/1 |
NGFR_HUMAN/1-89 |
|
Periplasmic binding protein-like II |
PBPb |
67 |
20.1 |
TR_FER |
34 |
5.216 |
6.20E-04 |
0.06500179 |
19 |
88 |
AABA_BACNO/1-22 |
TRFE_XENLA |
|
Winged helix DNA-binding domain |
ETS |
29 |
4.478 |
HSF |
30 |
5.714 |
2.61E-03 |
0.06678283 |
12 |
51 |
O01521/1-100|nuclear|ETS |
SFL1_YEAST/1-1|nuclear|HSF |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
MYSc |
60 |
7.1 |
2.22E-03 |
0.0673195 |
12 |
50 |
3raba.3.30.1.6.5 |
18509/1-712|signalling|MYSc |
|
P-loop containing nucleotide triphosphate hydrolases |
KISc |
55 |
7.962 |
RAB |
48 |
5.234 |
1.63E-03 |
0.06792717 |
11 |
42 |
rab4_human|signalling|RAB |
FL10_CHLRE|signalling|KISc |
|
P-loop containing nucleotide triphosphate hydrolases |
RAS |
35 |
3.813 |
GuKc |
31 |
11.74 |
1.85E-03 |
0.08281455 |
14 |
62 |
RASL_CAEEL-181|signalling|RAS |
KGUA_MYCGE/1-1|signalling|GuKc |
|
Homeodomain-like |
PAX |
18 |
2.807 |
HOX |
263 |
13.26 |
2.49E-03 |
0.09267984 |
9 |
32 |
CAA21499_1/1-69|nuclear|HOX |
51|Q20551/1-11|nuclear|PAX |
|
Winged helix DNA-binding domain |
HTH_CRP |
60 |
12.23 |
ETS |
29 |
4.478 |
1.98E-03 |
0.10843656 |
11 |
43 |
O17057/1-99|nuclear|ETS |
45|O69245/1-50|nuclear|HTH_CRP |
|
Winged helix DNA-binding domain |
HTH_ARSR |
118 |
15.27 |
HSF |
30 |
5.714 |
1.42E-03 |
0.12389895 |
7 |
19 |
/:SPTREMBLNEW|CAB44402|CAB44402|nuclear|HTH_ARSR |
SFL1_YEAST/1-1|nuclear|HSF |
|
P-loop containing nucleotide triphosphate hydrolases |
LMWPc |
28 |
9.449 |
RHOD |
142 |
25.06 |
5.85E-04 |
0.13852328 |
12 |
43 |
O67170/1-122 |
SPO00810|O00810 |
|
EGF/Laminin |
EGF |
459 |
11.23 |
EGF_Lam |
202 |
8.474 |
1.49E-03 |
0.1417929 |
5 |
10 |
TSP3_HUMAN/4-0 |
LMA4_HUMAN/2-0 |
|
P-loop containing nucleotide triphosphate hydrolases |
RHOD |
142 |
25.06 |
PTPc |
102 |
13.53 |
4.83E-04 |
0.16376685 |
13 |
48 |
P91568/1-255 |
Y052_METJA/1-12 |
|
P-loop containing nucleotide triphosphate hydrolases |
DSPc |
25 |
10.75 |
PTPc |
102 |
13.53 |
1.15E-03 |
0.16726463 |
21 |
107 |
O01556/1-268 |
pxmyxtyrp_1 |
|
Winged helix DNA-binding domain |
IRF |
19 |
7.643 |
HSF |
30 |
5.714 |
4.11E-03 |
0.17949234 |
12 |
54 |
IRF7_MOUSE/1-1|nuclear|IRF |
HSF_YEAST/1-10|nuclear|HSF |
|
P-loop containing nucleotide triphosphate hydrolases |
RHO |
36 |
4.271 |
GuKc |
31 |
11.74 |
3.65E-03 |
0.18301662 |
13 |
60 |
rho4_yeast|signalling|RHO |
Q17549/1-187|signalling|GuKc |
|
Actin de-polarizing proteins |
GEL |
104 |
17.93 |
ADF |
34 |
12.48 |
8.69E-04 |
0.194453 |
13 |
51 |
G4100186_2/1-92 |
ADF1_CAEEL |
|
EGF/Laminin |
EGF_CA |
496 |
7.316 |
FOLN |
20 |
6.078 |
4.59E-03 |
0.20410191 |
4 |
8 |
Q25678/3-0 |
O00468_1/1-26 |
|
ConA-like lectins/glucanases |
PTX |
39 |
5.093 |
GLECT |
47 |
12.75 |
3.99E-03 |
0.25909364 |
16 |
82 |
CRP1_LIMPO |
Q24953/1-138 |
|
Immunoglobulin |
IGv |
69 |
14.2 |
PKD |
83 |
18.78 |
1.01E-03 |
0.26934276 |
8 |
23 |
HV2C_RABIT-112 |
P76347_1/1-81 |
|
DEATH domain |
CARD |
11 |
8.259 |
DED |
18 |
9.773 |
3.34E-03 |
0.26958879 |
11 |
46 |
MC159L_MCV1/1 |
RN40627_1 |
|
C-type lectin-like |
CLECT |
218 |
23.23 |
LINK |
16 |
5.349 |
2.47E-03 |
0.30691546 |
10 |
38 |
PGCA_BOVIN/2-0 |
G2384945/1-118 |
|
P-loop containing nucleotide triphosphate hydrolases |
GuKc |
31 |
11.74 |
KISc |
55 |
7.962 |
4.11E-03 |
0.38417765 |
12 |
54 |
O52944/1-181|signalling|GuKc |
GG18309_1|signalling|KISc |
|
Ras-binding domain, RBD |
RBD |
14 |
8.412 |
RA |
38 |
17.42 |
2.82E-03 |
0.41323445 |
11 |
45 |
AAD24580_1/1-68 |
KDGD_HUMAN/1-10 |
|
Immunoglobulin |
IGc1 |
37 |
8.85 |
IGc2 |
64 |
13.46 |
3.78E-03 |
0.45027738 |
8 |
28 |
MUC_SUNMU-421P |
CNTR_CHICK-87P |
|
DEATH domain |
CARD |
11 |
8.259 |
DEATH |
44 |
16.96 |
4.73E-03 |
0.66254359 |
12 |
55 |
NGFR_HUMAN/1-89 |
RN40627_1 |
|
ConA-like lectins/glucanases |
LamG |
129 |
22.15 |
GLECT |
47 |
12.75 |
2.51E-03 |
0.70885538 |
15 |
71 |
Q93111/1-133 |
Q22574/1-140|extracellular|LamG |
|
P-loop containing nucleotide triphosphate hydrolases |
DSPc |
25 |
10.75 |
RHOD |
142 |
25.06 |
2.75E-03 |
0.74083625 |
13 |
58 |
1mkp.3.37.1.2.2 |
O67668/1-129 |
|
GTPase activation domain, GAP |
RhoGAP |
76 |
16.89 |
RasGAP |
19 |
9.908 |
4.44E-03 |
0.74301677 |
16 |
83 |
395289/1-375 |
Q23130/1-180 |
|
PH domain-like |
WH1 |
12 |
7.387 |
PH |
314 |
41.64 |
3.05E-03 |
0.93816377 |
12 |
52 |
VASP_CANFA/1-11 |
Q08877 |
|
P-loop containing nucleotide triphosphate hydrolases |
KISc |
55 |
7.962 |
AAA |
427 |
53.3 |
2.99E-03 |
1.26888005 |
10 |
39 |
SWISS|P47581|RE|Others|AAA |
KLP1_CHLRE|signalling|KISc |
|
P-loop containing nucleotide triphosphate hydrolases |
GuKc |
31 |
11.74 |
AAA |
427 |
53.3 |
2.22E-03 |
1.38914724 |
12 |
50 |
1gky.3.30.1.1.1 |
SWISS|O32861|FT|Others|AAA |