For each miRNA, we provide all predicted target sites as tab-separated files for download. The files contain one line per site with the following columns: CG-ID, position of site in 3'UTR, site pairing energy (D.mel), seed pairing energy (D.mel), 3x complex structure (D.mel), site pairing energy (D.pse), seed pairing energy (D.pse), 3x complex structure (D.pse), site type, site score.

The structure of the miRNA-target complex as suggested by RNAhybrid can be generated for both species by overlaying the three respective columns.

Download the predicted target genes (i.e. sum of all sites) here.

Please see the following papers for details and please cite them in your work:

• Brennecke J, Stark A, Russell RB, Cohen SM (2005) Principles of MicroRNA-Target Recognition. PLoS Biol 3(3): e85 (Free Full Text)
• Stark A, Brennecke J, Bushati N, Russell RB, Cohen SM (2003) Animal microRNAs Confer Robustness to Gene Expression and Have a Significant Impact on 3'UTR Evolution. Cell, In Press 2005. (Full Text PDF)

For questions regarding the availability of predictions or the method itself please contact Stephen M. Cohen.

Please contact me with suggestions or problems concerning this website (Alexander Stark).

© Alexander Stark, Julius Brennecke, Robert B. Russell and Stephen M. Cohen, 2003/5
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